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Pumpkin Spice Cookie Bites

Published: Oct 17, 2025 · Modified: Nov 6, 2025 by Terri Weir · · This post may contain affiliate links

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These pumpkin spice cookie bites are the best of two delicious autumn worlds. Sweet cookie cups are filled with a rich pumpkin spice cream cheese filling, creating poppable bites of fall you can hold in your hand.

A white surface with over a dozen mini pumpkin spice cookie bites on it.

This time of year, we’re all thinking about fall desserts, especially pumpkin. But while we’re thinking about rich dishes like pumpkin cream cheese pie and pumpkin spice everything, let’s not forget another classic sweet treat – cookies!

I love cookies in all forms, and during the fall, I like to infuse them with cozy flavors perfect for the cool weather and the upcoming holidays. Treats, like these pumpkin chocolate chip cookies and dark chocolate peppermint pecan cookies, are great this time of year because they can be served all season long or brought to holiday parties.

That’s why I’ve added these pumpkin spice cookie bites to my rotation. They combine the classic flavor and texture of cookies with a rich, pumpkin cream cheese filling that’s reminiscent of cheesecake to create a dessert that’s always a hit.

A white surface with 32 mini pumpkin spice cookie bites on it with fall foliage in the background.
Jump to:
  • Why You’ll Love This Recipe
  • Ingredients
  • Variations
  • How to Make Pumpkin Spice Cookie Bites
  • Tips
  • Pumpkin Spice Cookie Bites FAQ
  • More Tasty Pumpkin Recipes
  • Pumpkin Spice Cookie Bites

Why You’ll Love This Recipe

  • Simple Ingredients: The cookie cups and pumpkin filling for this recipe use basic ingredients found in any grocery store.
  • Super-Easy: Both the cookies and filling are incredibly basic recipes that even beginners can make with ease. It’s quick and easy!
  • Amazing Texture: The soft yet firm cookie cups, combined with the rich, mousse-like pumpkin filling, create a hand-held dessert loaded with textures that are as delicious as its flavors.
  • So Much Fall Flavor: Sweet cookie cups and pumpkin spice cream cheese filling make a dessert that explodes with yummy fall flavor.

Ingredients

A wood surface with all the ingredients needed to make pumpkin spice cookie bites on it.

You’ll find a complete list of ingredients and their exact amounts in the recipe card at the end of the post.

Variations

  • Cookie Cups: Use your favorite cookie dough recipe to create different dessert varieties. Any firm cookie, from sugar to chocolate chip, will work.
  • Snickerdoodle Cups: Try adding cinnamon and some nutmeg to create snickerdoodle cups for your pumpkin filling.
  • Gingerbread Pumpkin Bites: Use gingerbread spice in the cookie dough for a tasty fall combo.
  • Pumpkin Spice Cookie Pie: Press the cookie dough into round pie plates or pans and bake until golden. Then, spoon the pumpkin mixture into the prepared pans. Top with whipped topping and enjoy the pies!

How to Make Pumpkin Spice Cookie Bites

A glass bowl with sugar, butter, brown sugar, and eggs in it before being mixed together.

Mix the wet cookie ingredients in a large bowl.

A glass bowl with flour, baking powder, baking soda, and salt in it.

Whisk the dry cookie ingredients in a medium bowl.

A glass bowl with the wet cookie dough ingredients being mixed with the dry cookie ingredients.

Mix the dry ingredients into the wet ingredients until combined.

A mini cookie pan in the oven baking bite-size cookies.

Bake in a prepared mini muffin pan until the edges are golden and the centers are set. Then, make a depression in each cookie cup with the end of a spatula and cool completely.

A white mixing bowl with pumpkin spice pudding and evaporated milk mixed together.

Beat the pudding and evaporated milk in a medium bowl until thick.

A mixing bowl with cream cheese, pumpkin puree and spices mixed together.

Beat the cream cheese in a large bowl until light and fluffy. Then, beat in the remaining ingredients except the pumpkin pudding.

A mixing bowl with the cream cheese mixture and the pumpkin spice pudding mixture mixed together.

Mix the pudding into the cream cheese until combined.

A wire rack with approximately 20 pumpkin spice cookie bites on it.

Pipe or spoon the filling into the cooled cookie cups and enjoy!

Tips

  • The center of your cookie cups should be set, not browned. You want them soft so you can easily create the cup in the center to hold the filling.
  • Your pudding and evaporated milk mixture will be extremely thick. It’s supposed to be!
  • Fully soften your cream cheese for the easiest mixing and the best filling texture.
  • ALWAYS use full-fat cream cheese for this recipe. You won’t get the same rich, creamy texture if you use a low-fat version.
  • Make the indentation in your dough while the cookies are warm to ensure a nice, deep cup that holds its shape.
  • Your cookie cups must be completely cool before adding the filling. Even slightly warm cups will thin the filling.

Pumpkin Spice Cookie Bites FAQ

Why was my pumpkin spice cookie filling thin?

There are two main reasons your filling would be thin. First, if you use cook-and-serve pudding, it won’t set. Second, if you add your filling to warm cookie cups, their heat will thin it out.

Are pumpkin spice and gingerbread spice the same?

No, they aren’t. Although they use many of the same spices, the amounts differ, creating flavors that are unique to each blend.

Do I have to chill pumpkin spice cookie bites before serving?

No, you don’t. The pumpkin filling will already be chilled by the time the cookie bites are fully cooled, so you can just fill up the cups and serve.

A mini cookie cup with pumpkin spice filling in it with a little bite taken out.

More Tasty Pumpkin Recipes

  • A white plate with a slice of pumpkin pretzel dessert on it.
    Pumpkin Pretzel Dessert
  • A white square plate with a mini pumpkin loave on it with more mini loaves in the background.
    Mini Pumpkin Loaves
  • A wood surface with pumpkin cinnamon rolls on white square plates.
    Pumpkin Cinnamon Rolls
  • Pumpkin Pecan Cake with Cinnamon Buttercream Frosting

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A white surface with over a dozen mini pumpkin spice cookie bites on it.

Pumpkin Spice Cookie Bites

Great Grub, Delicious Treats
These pumpkin spice cookie bites are the best of two delicious autumn worlds. Sweet cookie cups are filled with a rich pumpkin spice cream cheese filling, creating poppable bites of fall you can hold in your hand.
No ratings yet
Print Recipe Pin Recipe
Prep Time 25 minutes mins
Cook Time 15 minutes mins
Total Time 40 minutes mins
Course Dessert
Cuisine American
Servings 48 Cookie Cups
Calories 140 kcal

Ingredients
  

Cookie Cups

  • 3 cups all purpose flour
  • 1 teaspoon baking soda
  • 1 teaspoon salt
  • ½ teaspoon baking powder
  • 1 cup butter, room temperature
  • 1 cup granulated sugar
  • ¾ cup brown sugar
  • 2 large eggs
  • 2 teaspoons vanilla extract

Pumpkin Spice Filling

  • 5 ounce evaporated milk
  • 3.4 ounce pumpkin spice instant pudding, small box
  • (2) 8 ounce cream cheese
  • ⅓ cup pumpkin puree
  • ½ teaspoon pumpkin pie spice
  • ½ teaspoon ground cinnamon

Instructions
 

  • Preheat the oven to 350 degrees and spray a mini muffin pan(s) with non-stick cooking spray.

Cookie Cups

  • In a large bowl, mix butter, sugar, brown sugar, rum extract, and eggs together until combined.
  • In a separate bowl, whisk together flour, baking soda, baking powder, and salt.
  • Slowly add dry ingredients into wet ingredients and mix on medium speed until just combined.
  • Roll dough into ½ inch balls and press firmly into the bottom of the muffin pan.
  • Bake for 15-17 minutes until edges are golden brown and the middle of the cookie is fully set.
  • Take the end of a spatula and press into the middle of each cookie to create a cup for filling.
  • Let sit in the muffin pan for 20 minutes and cool completely.

Pumpkin Spice Filling

  • In a medium mixing bowl, combine evaporated milk and pudding mix.
  • Beat on medium speed for 2 minutes (mixture will be very thick).
  • In a large mixing bowl, beat cream cheese until light and fluffy, about 3 minutes.
  • Add pumpkin puree, pumpkin pie spice, and ground cinnamon. Beat until combined.
  • Next, beat the pudding mixture into the cream cheese mixture until combined.
  • Once the cookies are cool, use a piping bag and pipe pumpkin spice filling into each mini cookie cup.
  • Optional: sprinkle cinnamon lightly over the filling and enjoy!

Notes

Storage
  • Refrigerate for up to 4 days in an airtight container. 
  • Serve chilled.
Tips
  • The center of your cookie cups should be set, not browned. You want them soft so you can easily create the cup in the center to hold the filling.
  • Your pudding and evaporated milk mixture will be extremely thick. It’s supposed to be!
  • Fully soften your cream cheese for the easiest mixing and the best filling texture.
  • ALWAYS use full-fat cream cheese for this recipe. You won’t get the same rich, creamy texture if you use a low-fat version.
  • Make the indentation in your dough while the cookies are warm to ensure a nice, deep cup that holds its shape.
  • Your cookie cups must be completely cool before adding the filling. Even slightly warm cups will thin the filling.
 
Nutritional values are approximate.
 
Please note that these values can change with different brands and any modifications made to the recipe. For the most accurate information, use a nutritional calculator with the exact brands and measurements.

Nutrition

Calories: 140kcalCarbohydrates: 16gProtein: 2gFat: 8gSaturated Fat: 5gMonounsaturated Fat: 2gCholesterol: 27mgSodium: 138mgPotassium: 46mgSugar: 10gVitamin A: 527IUCalcium: 26mg
Keyword Pumpkin Cookies, Pumpkin Spice, pumpkin spice cookie bites, pumpkin spice cookie cups, pumpkin spice cookies
Tried this recipe?Let us know how it was!
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Three photos in a collage of pumpkin spice cookie bites with the title of the recipe at the top.
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Reader Interactions

Comments

  1. Patti

    October 17, 2025 at 9:59 am

    Is it rum extract as stated in the recipe directions or vanilla extract as stated in the list of recipe ingredients?
    Thanks!

    • Great Grub, Delicious Treats

      October 17, 2025 at 10:33 am

      Hi Patti, it is the vanilla extract. I will fix the instructions. Thank you so much for letting me know. :)

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Welcome to Great Grub, Delicious Treats! Hello, my name is Terri and I'm so glad you stopped by. I'm a self taught cook/foodie at heart, mom to three kids, photographer and have a love for amazing food. I left my full time job of being a hospice admissions RN, which was super tough and extremely sad, and at times, very rewarding to be there for the patients and families to blog full time which I absolutely love. I hope you enjoy, and check out, all of the delicious recipes on my site while you're here! And don't forget to sign up to receive every new recipe right to your email. Thanks again for stopping by! :)

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Welcome to Great Grub, Delicious Treats! Hello, my name is Terri and I'm so glad you stopped by. I'm a self taught cook/foodie at heart, mom to three kids, photographer and have a love for amazing food. I left my full time job of being a hospice admissions RN, which was super tough and extremely sad, and at times, very rewarding to be there for the patients and families to blog full time which I absolutely love. I hope you enjoy, and check out, all of the delicious recipes on my site while you're here! And don't forget to sign up to receive every new recipe right to your email. Thanks again for stopping by! :) Read More…

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